PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004791G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 266aa    MW: 28867.5 Da    PI: 8.22
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004791G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19100149255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta eAa a+++a+ +l+g
  PH01004791G0030 100 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAGEAALAYDQAAYRLRG 149
                      59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-2999159No hitNo description
SuperFamilySSF541716.54E-22100159IPR016177DNA-binding domain
SMARTSM003801.0E-33100163IPR001471AP2/ERF domain
PROSITE profilePS5103222.576100157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-32100159IPR001471AP2/ERF domain
PRINTSPR003672.3E-10101112IPR001471AP2/ERF domain
PfamPF008472.3E-13101149IPR001471AP2/ERF domain
PRINTSPR003672.3E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAAAIDRPGD LMGALEPFIR DALSPQMQKI QPPPFPPTLP PPFPTGAHGY HYMGQPQAQL  60
SPAQMQYIQA RLRLRRQSGL GPRGQPMKPA AAAPPPAQKL YRGVRQRHWG KWVAEIRLPR  120
NRTRLWLGTF DTAGEAALAY DQAAYRLRGD AARLNFPDNA ASRAPLDAAV DAKLKSICHT  180
VAAASKNSKA TPINAPAVAA SSHCSSEHSG DSAVDDGSET SSASASPLAE MEQLDFNEVP  240
WDEAESFVLK KYPSYEIDWD SLLSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-1999157463ATERF1
2gcc_A4e-1999157463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1006670.0FP100667.1 Phyllostachys edulis cDNA clone: bphylf027g06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574464.11e-111PREDICTED: ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0A9FEZ51e-116A0A0A9FEZ5_ARUDO; Uncharacterized protein
STRINGBRADI3G35560.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-52related to AP2 4